MirGeneDB ID | Dmo-Mir-957 |
Family name |
MIR-957 (all species) |
Seed |
GAAACCG |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-957
Aga-Mir-957
Dan-Mir-957
Dme-Mir-957
Dsi-Mir-957
Dya-Mir-957-P1
Dya-Mir-957-P2
Gpa-Mir-957
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Diptera
|
Genome context (Dmoj_caf1) |
scaffold_6680: 22273703-22273770 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUCUUCCCACAAAAUGCCCACAAUGGAUCUUAGUUUUAGACGUGUUUUGGUGUGCUUGGGAGUUUUGUUCCGAUUGAAACCGUCCAAAACUGAGGCCAAUUGUGAGGCGAAAGCAUCCAGAAGGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUCUUCCCACAAAAU- - -| A A U UG GUGCUUGGGA
GCC CACAA UGG UCUUAGUUUU GACG GUUU GU \
CGG GUGUU ACC GGAGUCAAAA CUGC CAAA UA G
AAGGAAGACCUACGAAAG A A^ - C - GU GCCUUGUUUU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dmo-Mir-957_5p* |
mirBase accession | None |
Sequence |
0- CUUAGUUUUAGACGUGUUUUGGU -23
Get sequence
|
Mature sequence |
Dmo-Mir-957_3p |
mirBase accession | None |
Sequence |
46- UGAAACCGUCCAAAACUGAGGC -68
Get sequence
|