| MirGeneDB ID | Dya-Mir-957-P2 |
|---|
| Family name |
MIR-957 (all species) |
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| Seed |
GAAACCG |
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| Species |
Fruit fly (Drosophila yakuba) |
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| MiRBase ID |
|
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| Paralogues |
Dya-Mir-957-P1
|
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| Orthologues |
Aae-Mir-957
Aga-Mir-957
Dan-Mir-957
Dme-Mir-957
Dmo-Mir-957
Dsi-Mir-957
Gpa-Mir-957
|
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| Node of Origin (locus) |
D. yakuba
|
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| Node of Origin (family) |
Diptera
|
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Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3L: 22972000-22972067 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUCAUAUCCGUAGUGUUGUCCACAAUAGACCUUAGUUUUCGACGUGUUUUGGUGUGCUGGGGAGUUAUAUUCCGAUUGAAACCGUCCAAAACUGAGGCCAACUGUGAGGCGUGAGCAACUAUCCAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUCAUAUCCGUAGUGUU- -| AUAGA C U UG GUGCUGGGGA
GUC CACA CCUUAGUUUU GACG GUUU GU \
CGG GUGU GGAGUCAAAA CUGC CAAA UA G
CAAACCUAUCAACGAGUG A^ CAACC C - GU GCCUUAUAUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a single snp between the mirbase entry and this entry. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Dya-Mir-957-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUAGUUUUCGACGUGUUUUGGU -23
Get sequence
|
|---|
| Mature sequence |
Dya-Mir-957-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
46- UGAAACCGUCCAAAACUGAGGC -68
Get sequence
|
|---|
