Let-7-P2o9

MirGeneDB ID

Ebu-Let-7-P2o9

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Let-7-P1e Ebu-Let-7-P2o6 Ebu-Let-7-P2o7 Ebu-Let-7-P2o8 Ebu-Let-7-P2o10 Ebu-Let-7-P2o11 Ebu-Let-7-P2o12

Orthologues

Aae-Let-7 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mgi-Let-7 Mom-Let-7 Npo-Let-7 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02009579.1: 2998887-2998963 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCACGCCGUUGUGCUGGUGGGUCCCUGGGUUGAGGUAGUUGGUUGUAUAGAUGAAGAGGUGGUUCAGGUUGACCCUUUGGAGUAACCUAUACAGCCAACUGCCUUCCCCAGGGCCUCACAUGUUCAUAAUCGUUAAU

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Structure

        10          20        30        40        50        60        
UCACGCCGUUGUGCUGG--|   U       UU                   AUGAAGAGGUGGUUCAG 
                   UGGG CCCUGGG  GAGGUAGUUGGUUGUAUAG                 G
                   ACUC GGGACCC  UUCCGUCAACCGACAUAUC                 U
UAAUUGCUAAUACUUGUAC^   C       C-                   CAAUGAGGUUUCCCAGU 
     130       120       110        100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Ebu-Let-7-P2o9_5p

mirBase accession

None

Sequence

0- UGAGGUAGUUGGUUGUAUAGAU -22

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Star sequence

Ebu-Let-7-P2o9_3p* (predicted)

mirBase accession

None

Sequence

56- CUAUACAGCCAACUGCCUUCC -77

Get sequence