MirGeneDB ID | Ebu-Let-7-P1e |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Let-7-P2o6
Ebu-Let-7-P2o7
Ebu-Let-7-P2o8
Ebu-Let-7-P2o9
Ebu-Let-7-P2o10
Ebu-Let-7-P2o11
Ebu-Let-7-P2o12
|
Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cin-Let-7-P1
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Mgi-Let-7
Mom-Let-7
Npo-Let-7
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02009032.1: 3778870-3778937 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCGUGGUGGCAGGGCUGUGCGCGGUGGGAUGAGGUAGUAGGUUGUAUAGUUCACAGUCACACCCAACGGAGGUAACUGUACAACCUUCUAGCUUUCCCCAACGCCCGCCAGUUUGCCCUGUUACCCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCGUGGUGGCAGGGCU--| C G AU G U CACAGUCACA
GUG GCG UGGG GAG UAG AGGUUGUAUAGUU C
CGC CGC ACCC UUC AUC UCCAACAUGUCAA C
ACCCAUUGUCCCGUUUGAC^ C A CU G U UGGAGGCAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ebu-Let-7-P1e_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Ebu-Let-7-P1e_3p* |
mirBase accession | None |
Sequence |
46- CUGUACAACCUUCUAGCUUUCC -68
Get sequence
|