MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-87-o14

Family name MIR-87 (all species)
Seed UGAGCAA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-87-o12  Efe-Mir-87-o13  Efe-Mir-87-o15  Efe-Mir-87-o16  Efe-Mir-87-o17  Efe-Mir-87-o18 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.53011: 1093-1153 [-]
Precursor
(pre-Mir +30nt flank)
CAGUGACGUCAUAAGAAGAGGUCGGUCAGUGCACUUGAAAUCUUGUCUCAGGCCUCGGAUUCGACUCAGGUGAGCAAAACUUCAGGUGCAUCGACCACUGUCACGUAUACGACAAUGGAAG
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Structure
        10           20        30        40        50        60 
CAGUGACGUCAUAAGAA--  -|  C    A           AUC   U   AG    CGGAU 
                   GA GGU GGUC GUGCACUUGAA   UUG CUC  GCCU     U
                   CU UCA CCAG UACGUGGACUU   AAC GAG  UGGA     C
GAAGGUAACAGCAUAUGCA  G^  -    C           CAA   -   --    CUCAG 
 .       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Efe-Mir-87-o14_5p*

mirBase accessionNone
Sequence
0- GCACUUGAAAUCUUGUCUCAGGCCU -25
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Mature sequence

Efe-Mir-87-o14_3p

mirBase accessionNone
Sequence
39- GUGAGCAAAACUUCAGGUGCAU -61
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