MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-87-o17

Family name MIR-87 (all species)
Seed UGAGCAA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-87-o12  Efe-Mir-87-o13  Efe-Mir-87-o14  Efe-Mir-87-o15  Efe-Mir-87-o16  Efe-Mir-87-o18 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.649873: 298-359 [+]
Precursor
(pre-Mir +30nt flank)
AGCUAAGCGCAAGCAGCGAACGUGUCUGACACGCUUGAAAUAUUGCCUCAUACCUGUACAUGCGAACGAGGUGAGCAAAGUUUCGAGCGUUUUAGACUGUUACGGUCUAUCGAACAGAUUCC
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Structure
        10           20        30        40        50        60  
AGCUAAGCGCAAGCAGCG---|   U      C           A    C  AU    GUACAU 
                     AACG GUCUGA ACGCUUGAAAU UUGC UC  ACCU      \
                     UUGU CAGAUU UGCGAGCUUUG AACG AG  UGGA      G
CCUUAGACAAGCUAUCUGGCA^   -      U           A    -  --    GCAAGC 
120       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Efe-Mir-87-o17_5p*
mirBase accessionNone
Sequence 
0- ACGCUUGAAAUAUUGCCUCAUACCU -25
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Mature sequence

Efe-Mir-87-o17_3p
mirBase accessionNone
Sequence 
40- GUGAGCAAAGUUUCGAGCGUUU -62
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