MirGeneDB ID | Efe-Mir-87-o15 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-87-o12
Efe-Mir-87-o13
Efe-Mir-87-o14
Efe-Mir-87-o16
Efe-Mir-87-o17
Efe-Mir-87-o18
|
Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.241300: 131-190 [-]
|
Precursor (pre-Mir +30nt flank) |
GUGAUGGAAUCGCCUGUGCAGUCGGCCGUUACACUUGUAGAUUUGACUCAAACCUGUGGUCCGUAAAGGUGAGCAAAUCUUCAGGUGUGCCUGCUCGACCCCAUUCUCAUCCAGGUGAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGAUGGAAUCGCCUGUGCA- -| CGU U A AA GUGGU
GUCG GC UACACUUG AGAUUUG CUC ACCU \
CAGC CG GUGUGGAC UCUAAAC GAG UGGA C
GUAGUGGACCUACUCUUACCC U^ UCC U - -- AAUGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Efe-Mir-87-o15_5p* |
mirBase accession | None |
Sequence |
0- ACACUUGUAGAUUUGACUCAAACCU -25
Get sequence
|
Mature sequence |
Efe-Mir-87-o15_3p |
mirBase accession | None |
Sequence |
38- GUGAGCAAAUCUUCAGGUGUGC -60
Get sequence
|