| MirGeneDB ID | Efe-Mir-87-o16 |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-87-o12
Efe-Mir-87-o13
Efe-Mir-87-o14
Efe-Mir-87-o15
Efe-Mir-87-o17
Efe-Mir-87-o18
|
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.244941: 2060-2124 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GGUGAGCGUCCGUCGUUGUCCUUUGACGAUGCUCUCGAGACUUCGUCUCAGACCUAAGCACCGAUGAUCGAAGGUGAGCAAAGUCUCGAGUGCGUCGUCGUCGGCCGUUGUACGACCUCGGCAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGUGAGCGUCCGUCGUU--|U UU U C U AG AAGCACC
G CC UGACGAUGC CUCGAGACUU G CUC ACCU G
C GG GCUGCUGCG GAGCUCUGAA C GAG UGGA A
UUACGGCUCCAGCAUGUUG^C CU U A - -- AGCUAGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-87-o16_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GCUCUCGAGACUUCGUCUCAGACCU -25
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-87-o16_3p |
| mirBase accession | None |
|---|
| Sequence |
43- GUGAGCAAAGUCUCGAGUGCGU -65
Get sequence
|
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