| MirGeneDB ID | Gmo-Mir-456 |
|---|
| Family name |
MIR-456 (all species) |
|---|
| Seed |
AGGCUGG |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-456
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_690: 36960-37021 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGAGCUCAACCCCGCCGCCGGCUCAUGUGAGCAGGCAUCUUCCCAGCCUCCAUGUGGAUCCAGGAAUCUGCAGGCUGGUUAGAUGGUUGUCACACGCCAGGCCUUCCUCCUCCUCCUCCUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGAGCUCAACCCCGCCG---- -| UCA G G UC C UGUGGAU
CC GGC UGUGA CAG CAUCU CCAGCCU CA C
GG CCG ACACU GUU GUAGA GGUCGGA GU C
CCUCCUCCUCCUCCUCCUUCC A^ C-- - G UU C CUAAGGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Gmo-Mir-456_5p* |
| mirBase accession | MIMAT0044311 |
|---|
| Sequence |
0- GCAGGCAUCUUCCCAGCCUCCA -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-456_3p |
| mirBase accession | MIMAT0044312 |
|---|
| Sequence |
40- CAGGCUGGUUAGAUGGUUGUCA -62
Get sequence
|
|---|
