| MirGeneDB ID | Loc-Mir-456 |
|---|
| Family name |
MIR-456 (all species) |
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| Seed |
AGGCUGG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG16: 16565215-16565275 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAGAGCAUUGUGUAUUUGUUGGGUGUGUGCGCAGGCAUCUUCCCAGCCUACAUGUGGAUUCAUGAAUCUGCAGGCUGGUUAGAUGGUUGUCAUGCAUUCAGUUAUUAUCUGCAGCCUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAGAGCAUUGUGUAUUUG--| C G UC A UGUGGAU
UUGGGUGUGUG GCAG CAUCU CCAGCCU CA U
GACUUACGUAC UGUU GUAGA GGUCGGA GU C
ACUUUCCGACGUCUAUUAUU^ - G UU C CUAAGUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-456_5p* |
| mirBase accession | None |
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| Sequence |
0- GCAGGCAUCUUCCCAGCCUACA -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-456_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence
|
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