| MirGeneDB ID | Mal-Mir-456 |
|---|
| Family name |
MIR-456 (all species) |
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| Seed |
AGGCUGG |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884731.1: 2178111-2178172 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGCUGCUGCAGGCAGCUGCUGGCUCUGUGAGCAGGCAUCUUCCCAGCCUACACGUAGAUCCAGGAAUCUGCAGGCUGGUUAGAUGGUUGUCACAUGUCUGGCUAUCUUCAUCAAUACCCAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCUGCUGCAGGCAGCU---| UG CUC G G UC A CGUAGAU
GC G UGUGA CAG CAUCU CCAGCCU CA C
CG C ACACU GUU GUAGA GGUCGGA GU C
GAACCCAUAACUACUUCUAU^ GU UGU - G UU C CUAAGGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Mal-Mir-456_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GCAGGCAUCUUCCCAGCCUACA -22
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-456_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CAGGCUGGUUAGAUGGUUGUCA -62
Get sequence
|
|---|
