MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-456-P1

Family name MIR-456 (all species)
Seed AGGCUGG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-456-P2 
Orthologues Aca-Mir-456  Ami-Mir-456  Cli-Mir-456  Cmi-Mir-456  Cpi-Mir-456  Dre-Mir-456  Ebu-Mir-456  Gga-Mir-456  Gja-Mir-456  Gmo-Mir-456  Lch-Mir-456  Loc-Mir-456  Mal-Mir-456  Mun-Mir-456  Pbv-Mir-456  Pma-Mir-456  Sto-Mir-456  Tgu-Mir-456  Xtr-Mir-456 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030732.1: 45643356-45643416 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUACCAUUUAAGCUUUGUGGGUGUGUGAGCAGGCAUCUUCUCAGCCUACAUGUAGAUUGCCAAAUCUGCAGGCUGGUUAGAUGGUUGUCAUACAUUCACUUUAUAUCUGCAAAAAAGUU
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Structure
        10          20        30        40        50        60
GGCUACCAUUUAAGCUUU--|           G   G     UC       A  UGUAGAU 
                    GUGGGUGUGUGA CAG CAUCU  UCAGCCU CA       U
                    CACUUACAUACU GUU GUAGA  GGUCGGA GU       G
UUGAAAAAACGUCUAUAUUU^           -   G     UU       C  CUAAACC 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-456-P1_5p*
mirBase accessionNone
Sequence 
0- GCAGGCAUCUUCUCAGCCUACA -22
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Mature sequence

Xla-Mir-456-P1_3p
mirBase accessionNone
Sequence 
40- CAGGCUGGUUAGAUGGUUGUC -61
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