| MirGeneDB ID | Pma-Mir-456 |
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| Family name |
MIR-456 (all species) |
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| Seed |
AGGCUGG |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-456
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| Paralogues |
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| Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046074.1: 3682109-3682169 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAUCCUGGGACUUGGCUGUUAUGCCCGUGUGCAGGCAUCUUUCCAGCCUACACGUGGGGUCCUGAUUCUGCAGGCUGGUUAGAUGGUUGUCACAUGCAUGACUAAUGGCCGCAAUAUCUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAUCCUGGGACUUGGCU--| CC - G UU A CGUGGGG
GUUAUGC GUGUG CAG CAUCU CCAGCCU CA U
CAGUACG UACAC GUU GUAGA GGUCGGA GU C
CGUCUAUAACGCCGGUAAU^ -- U G UU C CUUAGUC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-456_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCAGGCAUCUUUCCAGCCUACA -22
Get sequence
|
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| Mature sequence |
Pma-Mir-456_3p |
| mirBase accession | MIMAT0019554 |
|---|
| Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence
|
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