MirGeneDB ID | Gpa-Mir-276-P1 |
Family name |
MIR-276 (all species) |
Seed |
AGGAACU |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-276-P2
|
Orthologues |
Aae-Mir-276-P1
Aga-Mir-276-P1
Bge-Mir-276
Dan-Mir-276-P1
Dlo-Mir-276
Dma-Mir-276
Dme-Mir-276-P1
Dmo-Mir-276-P1
Dpu-Mir-276
Dsi-Mir-276-P1
Dya-Mir-276-P1
Hme-Mir-276
Isc-Mir-276
Tca-Mir-276
Tur-Mir-276
|
Node of Origin (locus) |
Diptera
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Node of Origin (family) |
Arthropoda
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Genome context (GpalI1) |
Scaffold69: 987274-987339 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUAAACAAACAUGAAGCCUUUUUGCCAUAAGCGAGGUAUAGAGUUCCUACGUUCGAAAUUUUUAAAUAAUUCGUAGGAACUUAAUACCGUGCUCUUGGAGGGCUGUUGUUCAACACUAAUCAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUAAACAAACAUGAAG------| UUUG UA A A UUCGAAAUU
CCUU CCA AGCG GGUAU GAGUUCCUACG U
GGGA GGU UCGU CCAUA UUCAAGGAUGC U
UUUACUAAUCACAACUUGUUGUC^ ---- UC G A UUAAUAAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Gpa-Mir-276-P1_5p* |
mirBase accession | None |
Sequence |
0- AGCGAGGUAUAGAGUUCCUACG -22
Get sequence
|
Mature sequence |
Gpa-Mir-276-P1_3p |
mirBase accession | None |
Sequence |
44- UAGGAACUUAAUACCGUGCUCU -66
Get sequence
|