MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-276-P1

Family name MIR-276 (all species)
Seed AGGAACU
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-276-P2 
Orthologues Aae-Mir-276-P1  Aga-Mir-276-P1  Bge-Mir-276  Dan-Mir-276-P1  Dlo-Mir-276  Dma-Mir-276  Dme-Mir-276-P1  Dmo-Mir-276-P1  Dpu-Mir-276  Dsi-Mir-276-P1  Dya-Mir-276-P1  Hme-Mir-276  Isc-Mir-276  Tca-Mir-276  Tur-Mir-276 
Node of Origin (locus) Diptera
Node of Origin (family) Arthropoda
Genome context
(GpalI1)
Scaffold69: 987274-987339 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUAAACAAACAUGAAGCCUUUUUGCCAUAAGCGAGGUAUAGAGUUCCUACGUUCGAAAUUUUUAAAUAAUUCGUAGGAACUUAAUACCGUGCUCUUGGAGGGCUGUUGUUCAACACUAAUCAUUU
Get precursor sequence
Structure
        10              20        30        40        50        60  
GAUAAACAAACAUGAAG------|   UUUG   UA    A     A           UUCGAAAUU 
                       CCUU    CCA  AGCG GGUAU GAGUUCCUACG         U
                       GGGA    GGU  UCGU CCAUA UUCAAGGAUGC         U
UUUACUAAUCACAACUUGUUGUC^   ----   UC    G     A           UUAAUAAAU 
    120       110       100            90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-276-P1_5p*

mirBase accessionNone
Sequence
0- AGCGAGGUAUAGAGUUCCUACG -22
Get sequence
Mature sequence

Gpa-Mir-276-P1_3p

mirBase accessionNone
Sequence
44- UAGGAACUUAAUACCGUGCUCU -66
Get sequence