MirGeneDB ID | Laf-Mir-127 |
Family name |
MIR-127 (all species) |
Seed |
CGGAUCC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-127
Cfa-Mir-127
Cja-Mir-127
Cpo-Mir-127
Dno-Mir-127
Eca-Mir-127
Ete-Mir-127
Hsa-Mir-127
Mml-Mir-127
Mmr-Mir-127
Mmu-Mir-127
Ocu-Mir-127
Pab-Mir-127
Rno-Mir-127
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 75662711-75662766 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACCUCGUCGUGAUCACUGUCUCCAGCCUGCUGAAGCUCAGAGGGCUCUGAUUCAGAAAGAUCAUCGGAUCCGUCUGAGCUUGGCUGGUCGGAAGUCUCAUCAUCUGCUUCUCUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GACCUCGUCGUGAUCACUGUC--| A U G G C UCAGA
UCC GCC GCU AAGCUCAGA GG UCUGAU \
AGG UGG CGG UUCGAGUCU CC AGGCUA A
GCUCUCUUCGUCUACUACUCUGA^ C U - G U CUAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Laf-Mir-127_5p* |
mirBase accession | None |
Sequence |
0- CUGAAGCUCAGAGGGCUCUGAUU -23
Get sequence
|
Mature sequence |
Laf-Mir-127_3p |
mirBase accession | None |
Sequence |
34- UCGGAUCCGUCUGAGCUUGGCU -56
Get sequence
|