MirGeneDB ID | Lch-Mir-2970 |
---|---|
Family name | MIR-2970 (all species) |
Seed | ACAGUCA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-2970 Ami-Mir-2970 Cli-Mir-2970 Cpi-Mir-2970 Gga-Mir-2970 Gja-Mir-2970 Mdo-Mir-2970 Mun-Mir-2970 Neu-Mir-2970 Oan-Mir-2970 Pbv-Mir-2970 Sha-Mir-2970 Spt-Mir-2970 Tgu-Mir-2970 Xla-Mir-2970-P1 Xla-Mir-2970-P2 Xtr-Mir-2970 |
Node of Origin (locus) | Sarcopterygii |
Node of Origin (family) | Sarcopterygii |
Genome context (LatCha1_add) |
JH129058.1: 47253-47308 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UUUCUCUCUCUCUCUUUCUCUGUCCCCACGGACAGUCAGCAGUUGGUCUGGUGUGAGGGGAUCUCAGAUCAGCUCUUGACUGUGGGUGGUGUAGAAGAGUUAGACAGCAAGGAAGGGet precursor sequence |
Structure | 10 20 30 40 50 UUUCUCUCUCUCUCUUUC---| UCC GG C UGUGA UCUG CCAC ACAGUCAG AGUUGGUCUGG G AGAU GGUG UGUCAGUU UCGACUAGACU G GGAAGGAACGACAGAUUGAGA^ GU- GG C CUAGG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Lch-Mir-2970_5p (predicted) |
mirBase accession | None |
Sequence |
0- GACAGUCAGCAGUUGGUCUGGU -22
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|
Star sequence | Lch-Mir-2970_3p* (predicted) |
mirBase accession | None |
Sequence |
34- CAGAUCAGCUCUUGACUGUGGG -56
Get sequence
|