MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(LatCha1_add)
JH129058.1: 47253-47308 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUCUCUCUCUCUUUCUCUGUCCCCACGGACAGUCAGCAGUUGGUCUGGUGUGAGGGGAUCUCAGAUCAGCUCUUGACUGUGGGUGGUGUAGAAGAGUUAGACAGCAAGGAAGG
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Structure
        10           20        30        40        50       
UUUCUCUCUCUCUCUUUC---|   UCC    GG        C           UGUGA 
                     UCUG   CCAC  ACAGUCAG AGUUGGUCUGG     G
                     AGAU   GGUG  UGUCAGUU UCGACUAGACU     G
GGAAGGAACGACAGAUUGAGA^   GU-    GG        C           CUAGG 
    110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Mir-2970_5p (predicted)

mirBase accessionNone
Sequence
0- GACAGUCAGCAGUUGGUCUGGU -22
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Star sequence

Lch-Mir-2970_3p* (predicted)

mirBase accessionNone
Sequence
34- CAGAUCAGCUCUUGACUGUGGG -56
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