MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(colLiv2)		 scaffold277: 2757543-2757601 [+]
Clustered miRNAs
(< 50kb from Mir-2970)		 Mir-425 scaffold277: 2757276-2757337 [+]
Mir-2970 scaffold277: 2757543-2757601 [+]
Precursor
(pre-Mir +30nt flank)
GCAGGGGUCCAGGACAGCUCCUGCCCUGCGGACAGUCAGCAGUUGGUCUGGUGUGAGCAGCGAUUCUCAGAUCACCUCUUGGCUGUGGGUGGUGCAGGGAGCACCCCACCGCAGCACGG
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Structure
        10          20        30        40        50         
GCAGGGGUCCAGGACAGC--|     C UG GG        C  U        UGUGAGC 
                    UCCUGC C  C  ACAGUCAG AG UGGUCUGG       \
                    GGGACG G  G  UGUCGGUU UC ACUAGACU       A
GGCACGACGCCACCCCACGA^     U GU GG        C  C        CUUAGCG 
       110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and -1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-2970_5p
mirBase accessionMIMAT0038713
Sequence 
0- GACAGUCAGCAGUUGGUCUGGU -22
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Star sequence

Cli-Mir-2970_3p*
mirBase accessionMIMAT0038714
Sequence 
37- CAGAUCACCUCUUGGCUGUGGG -59
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