MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-2970

Family name MIR-2970 (all species)
Seed ACGGUCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041749.1: 91029185-91029243 [-]
Clustered miRNAs
(< 50kb from Mir-2970)
Mir-425 NC_041749.1: 91030435-91030497 [-]
Mir-191 NC_041749.1: 91032820-91032883 [-]
Precursor
(pre-Mir +30nt flank)
UGGGGGAGGAAGUCUCUUCCUGUCACUGCAGACGGUCAGUAGUUGGUCUGGUGUGAGCAGCAAUUCUCAGAUCAUCUCUUGGCUAUGGAUGGUGGAGAGAGCACCGCACUGGCACUGUA
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Structure
        10        20        30           40        50         
UGGGGGAGGAAGUCUCUUC  G  A UG AGAC---|     U  U        UGUGAGC 
                   CU UC C  C       GGUCAG AG UGGUCUGG       \
                   GA AG G  G       UCGGUU UC ACUAGACU       A
AUGUCACGGUCACGCCAC-  G  A GU GUAGGUA^     C  U        CUUAACG 
       110        100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-2970_5p (predicted)

mirBase accessionNone
Sequence
0- GACGGUCAGUAGUUGGUCUGGU -22
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Star sequence

Oan-Mir-2970_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGAUCAUCUCUUGGCUAUGGA -59
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