MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(TaeGut1_add)
12: 8756561-8756619 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2970)
Mir-2970 12: 8756561-8756619 [-] UCSC Ensembl
Mir-425 12: 8756804-8756866 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGGGUUCUGGGCAGCUCCUGCCCUGCGGACAGUCAGCAGUUGGUCUGGUGUGAGCAGCAAUUCUCAGAUCACCUCUUGGCUGUGGGUGGUGCAGGGAGCACCCCACCAUGGCAUGG
Get precursor sequence
Structure
        10          20        30        40        50         
GCAGGGGUUCUGGGCAGC--|     C UG GG        C  U        UGUGAGC 
                    UCCUGC C  C  ACAGUCAG AG UGGUCUGG       \
                    GGGACG G  G  UGUCGGUU UC ACUAGACU       A
GGUACGGUACCACCCCACGA^     U GU GG        C  C        CUUAACG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-2970_5p

mirBase accessionMIMAT0014479
Sequence
0- GACAGUCAGCAGUUGGUCUGGU -22
Get sequence
Star sequence

Tgu-Mir-2970_3p*

mirBase accessionMIMAT0026966
Sequence
37- CAGAUCACCUCUUGGCUGUGGG -59
Get sequence