MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-425
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmu-Mir-425  Mun-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(TaeGut1_add)
12: 8756804-8756866 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-425)
Mir-2970 12: 8756561-8756619 [-] UCSC Ensembl
Mir-425 12: 8756804-8756866 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUCCAGCCCCUGGAGAGAGAUGGCUUUGGAAUGACACGAUCACUCCCGCUGAGCCAGCAGCCAGAGAGCCAUCGGGGAUGUCGUGUCUUUCCAAAGCUCUUUCGGCGCCUCCGAGAGCCCUC
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Structure
        10          20        30        40        50        60  
GAUCCAGCCCCUGGAGA--|   U          U       U  CU    C  A  CAGCAG 
                   GAGA GGCUUUGGAA GACACGA CA  CCCG UG GC      \
                   CUUU UCGAAACCUU CUGUGCU GU  GGGC AC CG      C
CUCCCGAGAGCCUCCGCGG^   C          U       -  AG    U  -  AGAGAC 
 120       110       100        90         80         70
Deep sequencing
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CommentThere are Dicer site -1 and -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-425_5p

mirBase accessionMIMAT0014470
Sequence
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Tgu-Mir-425_3p*

mirBase accessionMIMAT0014471
Sequence
40- CAUCGGGGAUGUCGUGUCUUUCC -63
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