MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-425
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(chrPic1)		 JH584670: 1165773-1165833 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-2970 JH584670: 1164353-1164411 [-] UCSC Ensembl
Mir-425 JH584670: 1165773-1165833 [-] UCSC Ensembl
Mir-191 JH584670: 1168666-1168729 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCCAGCCGCUGGCGAGAAAUUGCUUUGGAAUGACACGAUCACUCCCGCUGAGCAAGCAGCCAGAGCCAUCGGGAAUAUCGUGUCCGUCCAAAGCUUUUUCGGCACCUCCUGGAGGAAGA
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Structure
        10          20        30        40        50        60 
CAGCCAGCCGCUGGCGA--|   UU        AU        CAC     C  A  AAGCA 
                   GAAA  GCUUUGGA  GACACGAU   UCCCG UG GC     \
                   CUUU  CGAAACCU  CUGUGCUA   AGGGC AC CG     G
AGAAGGAGGUCCUCCACGG^   UU        GC        UA-     U  -  AGACC 
 .       110       100        90        80         70
Deep sequencing
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CommentThere are Dicer cuts -1 and -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-425_5p
mirBase accessionMIMAT0037875
Sequence 
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Cpi-Mir-425_3p*
mirBase accessionMIMAT0037876
Sequence 
38- CAUCGGGAAUAUCGUGUCCGUCC -61
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