| MirGeneDB ID | Laf-Mir-425 |
|---|---|
| Family name | MIR-425 (all species) |
| Seed | AUGACAC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-425 Ami-Mir-425 Bta-Mir-425 Cfa-Mir-425 Cja-Mir-425 Cli-Mir-425 Cmi-Mir-425 Cpi-Mir-425 Cpo-Mir-425 Dno-Mir-425 Dre-Mir-425 Eca-Mir-425 Ete-Mir-425 Gga-Mir-425 Gja-Mir-425 Gmo-Mir-425 Hsa-Mir-425 Loc-Mir-425 Mal-Mir-425 Mdo-Mir-425 Mml-Mir-425 Mmr-Mir-425 Mmu-Mir-425 Mun-Mir-425 Neu-Mir-425 Oan-Mir-425 Ocu-Mir-425 Pab-Mir-425 Pbv-Mir-425 Rno-Mir-425 Sha-Mir-425 Spt-Mir-425 Sto-Mir-425 Tgu-Mir-425 Tni-Mir-425 Xla-Mir-425-P1 Xla-Mir-425-P2 Xtr-Mir-425 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010039.1: 18333576-18333638 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGGGAGCCUGCAGCAUGGAAAGCGCUUUGGAAUGACACGAUCACUCCCGUUGAGUGGGCACCCAAGAAGCCAUCGGGAAUGUCGUGUCCGCCCAGUGCUCUUUUGGCGCCUCCCAGCAGGGCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CGGGAGCCUGCAGCAUG--| C U AAU U C U A UGGGCAC GAAAG GC UUGG GACACGA CA UCCCG UG G \ UUUUC CG GACC CUGUGCU GU AGGGC AC C C UCGGGACGACCCUCCGCGG^ U U CGC - A U - GAAGAAC 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There are Dicer cuts -1 and -2 on both arms. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-425_5p |
| mirBase accession | None |
| Sequence |
0- AAUGACACGAUCACUCCCGUUGAG -24
Get sequence
|
| Star sequence | Laf-Mir-425_3p* |
| mirBase accession | None |
| Sequence |
40- CAUCGGGAAUGUCGUGUCCGCCC -63
Get sequence
|
