MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010039.1: 18333576-18333638 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGAGCCUGCAGCAUGGAAAGCGCUUUGGAAUGACACGAUCACUCCCGUUGAGUGGGCACCCAAGAAGCCAUCGGGAAUGUCGUGUCCGCCCAGUGCUCUUUUGGCGCCUCCCAGCAGGGCU
Get precursor sequence
Structure
        10          20        30        40        50        60  
CGGGAGCCUGCAGCAUG--|    C  U    AAU       U  C     U  A UGGGCAC 
                   GAAAG GC UUGG   GACACGA CA UCCCG UG G       \
                   UUUUC CG GACC   CUGUGCU GU AGGGC AC C       C
UCGGGACGACCCUCCGCGG^    U  U    CGC       -  A     U  - GAAGAAC 
 120       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-425_5p
mirBase accessionNone
Sequence 
0- AAUGACACGAUCACUCCCGUUGAG -24
Get sequence
Star sequence

Laf-Mir-425_3p*
mirBase accessionNone
Sequence 
40- CAUCGGGAAUGUCGUGUCCGCCC -63
Get sequence