MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LepOcu1)		 LG5: 50273200-50273262 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUGUCACGGAGGGAGGCGGCACUCUGGAAUGACACGUUUUCUCCCGGUUCGCCAGACCCACAGGAGCCAUCGGGAAACUCGUGUCAGCCAAGACUGACGGCCCAGGACACCCGUCGAGGC
Get precursor sequence
Structure
        10         20          30        40        50        60 
GUGAUGUCACGGAGGGA-   GG-  C  -|  AA       UU  C       UCGCCAGAC 
                  GGC   CA UC UGG  UGACACG  UU UCCCGGU         C
                  CCG   GU AG ACC  ACUGUGC  AA AGGGCUA         C
CGGAGCUGCCCACAGGAC   GCA  C  A^  G-       UC  -       CCGAGGACA 
 120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-425_5p
mirBase accessionNone
Sequence 
0- AAUGACACGUUUUCUCCCGGUUCG -24
Get sequence
Co-mature sequence

Loc-Mir-425_3p
mirBase accessionNone
Sequence 
40- CAUCGGGAAACUCGUGUCAGCCA -63
Get sequence