MirGeneDB ID | Ete-Mir-425 |
Family name |
MIR-425 (all species) |
Seed |
AUGACAC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-425
Ami-Mir-425
Bta-Mir-425
Cfa-Mir-425
Cja-Mir-425
Cli-Mir-425
Cmi-Mir-425
Cpi-Mir-425
Cpo-Mir-425
Dno-Mir-425
Dre-Mir-425
Eca-Mir-425
Gga-Mir-425
Gja-Mir-425
Gmo-Mir-425
Hsa-Mir-425
Laf-Mir-425
Loc-Mir-425
Mal-Mir-425
Mdo-Mir-425
Mml-Mir-425
Mmr-Mir-425
Mmu-Mir-425
Mun-Mir-425
Neu-Mir-425
Oan-Mir-425
Ocu-Mir-425
Pab-Mir-425
Pbv-Mir-425
Rno-Mir-425
Sha-Mir-425
Spt-Mir-425
Sto-Mir-425
Tgu-Mir-425
Tni-Mir-425
Xla-Mir-425-P1
Xla-Mir-425-P2
Xtr-Mir-425
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (echTel2) |
JH980310: 54502-54564 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CGGGAGUCCGCAGCAUGGAAAGCGCUUUGGAAUGACACGAUCACUCCCGUUGAGUGGGCACCCAAGAAGCCAUCGGGAAUGUCGUGUCCGCCCAGUGCUCUUUUGGCUCCUCCCAGCAGGGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGGAGUCCGCAGCAUG--| C U AAU U C U A GGGCAC
GAAAG GC UUGG GACACGA CA UCCCG UG GU \
UUUUC CG GACC CUGUGCU GU AGGGC AC CG C
GCGGGACGACCCUCCUCGG^ U U CGC - A U - AAGAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts -1 and -2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-425_5p |
mirBase accession | None |
Sequence |
0- AAUGACACGAUCACUCCCGUUGAGU -25
Get sequence
|
Star sequence |
Ete-Mir-425_3p* |
mirBase accession | None |
Sequence |
40- CAUCGGGAAUGUCGUGUCCGCCC -63
Get sequence
|