Mir-425-P1

MirGeneDB ID

Xla-Mir-425-P1

Family name

MIR-425 (all species)

Seed

AUGACAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-425-1

Paralogues

Xla-Mir-425-P2

Orthologues

Aca-Mir-425 Ami-Mir-425 Bta-Mir-425 Cfa-Mir-425 Cja-Mir-425 Cli-Mir-425 Cmi-Mir-425 Cpi-Mir-425 Cpo-Mir-425 Dno-Mir-425 Dre-Mir-425 Eca-Mir-425 Ete-Mir-425 Gga-Mir-425 Gja-Mir-425 Gmo-Mir-425 Hsa-Mir-425 Laf-Mir-425 Loc-Mir-425 Mal-Mir-425 Mdo-Mir-425 Mml-Mir-425 Mmr-Mir-425 Mmu-Mir-425 Mun-Mir-425 Neu-Mir-425 Oan-Mir-425 Ocu-Mir-425 Pab-Mir-425 Pbv-Mir-425 Rno-Mir-425 Sha-Mir-425 Spt-Mir-425 Sto-Mir-425 Tgu-Mir-425 Tni-Mir-425 Xtr-Mir-425

Node of Origin (locus)

X. laevis

Node of Origin (family)

Gnathostomata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 131952638-131952700 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCGGCGCCACGGUGAGACUUAGCCUUGGAAUGACACGAUCACUCCCGUUGAGCCGAAACACAUAGCGCCAUCGGGAAUAUCGUGUCGCUCCAAAGCUCUCUCUUCAACACCAGUCAAGACA

Get precursor sequence

Structure

        10          20        30        40        50        60  
AGGCGGCGCCACGGUGA--| CUU   C     A         CAC     U  A CCGAAAC 
                   GA   AGC UUGGA UGACACGAU   UCCCG UG G       \
                   CU   UCG AACCU GCUGUGCUA   AGGGC AC C       A
ACAGAACUGACCACAACUU^ CUC   A     C         UA-     U  - GCGAUAC 
 120       110       100        90        80          70

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-425-P1_5p

mirBase accession

MIMAT0046592

Sequence

0- AAUGACACGAUCACUCCCGUUGAG -24

Get sequence

Star sequence

Xla-Mir-425-P1_3p*

mirBase accession

MIMAT0046593

Sequence

40- CAUCGGGAAUAUCGUGUCGCUCC -63

Get sequence