MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-425
Paralogues
Orthologues Aca-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710564.1: 64139-64201 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-191 NW_017710564.1: 63665-63728 [+] UCSC
Mir-425 NW_017710564.1: 64139-64201 [+] UCSC
Mir-2970 NW_017710564.1: 64511-64568 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGACAGCCCUCUGGAGAGAGAUUGCUUUGGAAUGACACGAUCACUCCCGCUGAGCGAGACGCCCGACAGCCAUCGGGAAUAUCGUGUCGGUCCAAAGCUCUUUCGGCGCCACCCGGAGCAGAG
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Structure
        10          20        30        40        50        60  
GGACAGCCCUCUGGAGA--|   UU        A         CAC     C  A  GAGACG 
                   GAGA  GCUUUGGA UGACACGAU   UCCCG UG GC      \
                   CUUU  CGAAACCU GCUGUGCUA   AGGGC AC CG      C
GAGACGAGGCCCACCGCGG^   CU        G         UA-     U  -  ACAGCC 
 120       110       100        90        80          70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-425_5p
mirBase accessionMIMAT0038277
Sequence 
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Ami-Mir-425_3p*
mirBase accessionMIMAT0038278
Sequence 
40- CAUCGGGAAUAUCGUGUCGGUCC -63
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