MirGeneDB ID | Sto-Mir-425 |
Family name |
MIR-425 (all species) |
Seed |
AUGACAC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-425
Ami-Mir-425
Bta-Mir-425
Cfa-Mir-425
Cja-Mir-425
Cli-Mir-425
Cmi-Mir-425
Cpi-Mir-425
Cpo-Mir-425
Dno-Mir-425
Dre-Mir-425
Eca-Mir-425
Ete-Mir-425
Gga-Mir-425
Gja-Mir-425
Gmo-Mir-425
Hsa-Mir-425
Laf-Mir-425
Loc-Mir-425
Mal-Mir-425
Mdo-Mir-425
Mml-Mir-425
Mmr-Mir-425
Mmu-Mir-425
Mun-Mir-425
Neu-Mir-425
Oan-Mir-425
Ocu-Mir-425
Pab-Mir-425
Pbv-Mir-425
Rno-Mir-425
Sha-Mir-425
Spt-Mir-425
Tgu-Mir-425
Tni-Mir-425
Xla-Mir-425-P1
Xla-Mir-425-P2
Xtr-Mir-425
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (GCA_003427355_STO_add) |
BFAA01003406.1: 122844-122905 [+]
|
Precursor (pre-Mir +30nt flank) |
GGUGUGUACGAGGUGGUGGCUGUCCUCUGGAAUGACACGAUCACUCCCGGUUAAGCCUAAAUAAAUAUUUACCGGGAAACUUGUGUCAGUCAAGAGGGCUUCCCAAGUCUUCAAUUGUUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGUGUACGAGGUGGU--| CU G A UCAC UAAGCCUAA
GG GUCCUCU GA UGACACGA UCCCGGU \
CC CGGGAGA CU ACUGUGUU AGGGCCA A
CCUUUGUUAACUUCUGAAC^ UU A G CAA- UUUAUAAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-425_5p |
mirBase accession | None |
Sequence |
0- AAUGACACGAUCACUCCCGGUUA -23
Get sequence
|
Star sequence |
Sto-Mir-425_3p* |
mirBase accession | None |
Sequence |
39- UACCGGGAAACUUGUGUCAGUCA -62
Get sequence
|