MirGeneDB ID | Gga-Mir-425 |
Family name |
MIR-425 (all species) |
Seed |
AUGACAC |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-425
Ami-Mir-425
Bta-Mir-425
Cfa-Mir-425
Cja-Mir-425
Cli-Mir-425
Cmi-Mir-425
Cpi-Mir-425
Cpo-Mir-425
Dno-Mir-425
Dre-Mir-425
Eca-Mir-425
Ete-Mir-425
Gja-Mir-425
Gmo-Mir-425
Hsa-Mir-425
Laf-Mir-425
Loc-Mir-425
Mal-Mir-425
Mdo-Mir-425
Mml-Mir-425
Mmr-Mir-425
Mmu-Mir-425
Mun-Mir-425
Neu-Mir-425
Oan-Mir-425
Ocu-Mir-425
Pab-Mir-425
Pbv-Mir-425
Rno-Mir-425
Sha-Mir-425
Spt-Mir-425
Sto-Mir-425
Tgu-Mir-425
Tni-Mir-425
Xla-Mir-425-P1
Xla-Mir-425-P2
Xtr-Mir-425
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (Gallus_gallus.GRCg6a) |
12: 12045651-12045713 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUCCGGCCCUUGGAGAGAGACGGCUUUGGAAUGACACGAUCACUCCCGCUGAGCGCGCAGCCACAGAGCCAUCGGGGAUGUCGUGUCUGUCCUAAGCUCUUUCGGCGCCUCUGAGCCCCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUCCGGCCCUUGGAGA--| C U AU U CU C AGCGCGCA
GAGA GGCUU GGA GACACGA CA CCCG UG G
CUUU UCGAA CCU CUGUGCU GU GGGC AC C
CCCCCCCGAGUCUCCGCGG^ C U GU - AG U CGAGACAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-425_5p |
mirBase accession | None |
Sequence |
0- AAUGACACGAUCACUCCCGCUGA -23
Get sequence
|
Star sequence |
Gga-Mir-425_3p* |
mirBase accession | None |
Sequence |
40- CAUCGGGGAUGUCGUGUCUGUCC -63
Get sequence
|