MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01014177.1: 29597-29658 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGGAGCCGGCAGGAGAGAAACGGCUUAGGAAUGACACGAUCACUCCCGCUGAGCGAGCAGCCAGGAGCCACCGGGAAUGUCGUGUCCGCCCCAAGCUCUUUCAGUGCCACCAUGGGAUGUG
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Structure
        10          20        30        40        50        60 
UCGGAGCCGGCAGGAGA--|   C     A  AAU       U  C     C  A  GAGCA 
                   GAAA GGCUU GG   GACACGA CA UCCCG UG GC     G
                   CUUU UCGAA CC   CUGUGCU GU AGGGC AC CG     C
GUGUAGGGUACCACCGUGA^   C     C  CGC       -  A     C  -  AGGAC 
120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-425_5p (predicted)

mirBase accessionNone
Sequence
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Spt-Mir-425_3p* (predicted)

mirBase accessionNone
Sequence
39- CACCGGGAAUGUCGUGUCCGCCC -62
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