MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-425
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)		 scaffold277: 2757276-2757337 [+]
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-425 scaffold277: 2757276-2757337 [+]
Mir-2970 scaffold277: 2757543-2757601 [+]
Precursor
(pre-Mir +30nt flank)
ACCUGUCCCUUGGGAGAGAGACGGCUUUGGAAUGACACGAUCACUCCCGCUGAGCGGGCAGCCUGAGGCCAUCGGGGAUGUCGUGUCUGUCCAAAGCUCUUUCGGUGCCUCCGAGAGCCCCC
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Structure
        10          20        30        40        50        60 
ACCUGUCCCUUGGGAGA--|   C         AU       U  CU    C  A  GGGCA 
                   GAGA GGCUUUGGA  GACACGA CA  CCCG UG GC     G
                   CUUU UCGAAACCU  CUGUGCU GU  GGGC AC CG     C
CCCCCGAGAGCCUCCGUGG^   C         GU       -  AG    U  -  GAGUC 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-425_5p
mirBase accessionMIMAT0038632
Sequence 
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Cli-Mir-425_3p*
mirBase accessionMIMAT0038633
Sequence 
39- CAUCGGGGAUGUCGUGUCUGUCC -62
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