Mir-425

MirGeneDB ID

Eca-Mir-425

Family name

MIR-425 (all species)

Seed

AUGACAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-425

Paralogues

Orthologues

Aca-Mir-425 Ami-Mir-425 Bta-Mir-425 Cfa-Mir-425 Cja-Mir-425 Cli-Mir-425 Cmi-Mir-425 Cpi-Mir-425 Cpo-Mir-425 Dno-Mir-425 Dre-Mir-425 Ete-Mir-425 Gga-Mir-425 Gja-Mir-425 Gmo-Mir-425 Hsa-Mir-425 Laf-Mir-425 Loc-Mir-425 Mal-Mir-425 Mdo-Mir-425 Mml-Mir-425 Mmr-Mir-425 Mmu-Mir-425 Mun-Mir-425 Neu-Mir-425 Oan-Mir-425 Ocu-Mir-425 Pab-Mir-425 Pbv-Mir-425 Rno-Mir-425 Sha-Mir-425 Spt-Mir-425 Sto-Mir-425 Tgu-Mir-425 Tni-Mir-425 Xla-Mir-425-P1 Xla-Mir-425-P2 Xtr-Mir-425

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009163.1: 39558612-39558674 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUGCGCCUGCGGCAUGGAAAGCGCUUUGGAAUGACACGAUCACUCCCGUUGAGUGGGCACACAAGAAGCCAUCGGGAAUAUCGUGUCCGCCCAGUGCUCUUUCGGCGCCUCCCAGCAGGACC

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Structure

        10          20        30        40        50        60  
CGUGCGCCUGCGGCAUG--|    C  U    AAU        CAC     U  A  GGGCAC 
                   GAAAG GC UUGG   GACACGAU   UCCCG UG GU      \
                   CUUUC CG GACC   CUGUGCUA   AGGGC AC CG      A
CCAGGACGACCCUCCGCGG^    U  U    CGC        UA-     U  -  AAGAAC 
 120       110       100        90        80          70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-425_5p

mirBase accession

None

Sequence

0- AAUGACACGAUCACUCCCGUUGAGU -25

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Star sequence

Eca-Mir-425_3p*

mirBase accession

MIMAT0034749

Sequence

40- CAUCGGGAAUAUCGUGUCCGCCC -63

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