MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(chrPic1)		 JH584670: 1164353-1164411 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2970)		 Mir-2970 JH584670: 1164353-1164411 [-] UCSC Ensembl
Mir-425 JH584670: 1165773-1165833 [-] UCSC Ensembl
Mir-191 JH584670: 1168666-1168729 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGCGCACAGGUCUCUUCCUGUCACUGCAGACAGUCAGUAGUUGGUCUGGCGAGAGCAGGAAUUCUCAGAUCACCUCUUGGCUGUGAGUGGUGGUGCAGAGAACACUGCACCUUUGCU
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Structure
        10        20          30        40        50         
GAGGCGCACAGGUCUCUUC    --|  UG AG        U  U        CGAGAGC 
                   CUGU  CAC  C  ACAGUCAG AG UGGUCUGG       \
                   GACG  GUG  G  UGUCGGUU UC ACUAGACU       A
UCGUUUCCACGUCACAAGA    UG^  GU AG        C  C        CUUAAGG 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-2970_5p
mirBase accessionMIMAT0037945
Sequence 
0- GACAGUCAGUAGUUGGUCUGGC -22
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Star sequence

Cpi-Mir-2970_3p*
mirBase accessionMIMAT0037946
Sequence 
37- CAGAUCACCUCUUGGCUGUGAG -59
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