MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-2970
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2  Xtr-Mir-2970 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(monDom5_add)
6: 201968080-201968138 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2970)
Mir-2970 6: 201968080-201968138 [-] UCSC Ensembl
Mir-425 6: 201968561-201968623 [-] UCSC Ensembl
Mir-191 6: 201970821-201970884 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGACCUCGCGGUCUCUUCCUGUCACUGCAGACAGUCAGUAGUUGGUCUGGUGUGAGCAGGAAUUCUCAGAUCACCUCUUGGCUGUGAGUGGUGGAGAGAGCACUGCCCUGGUAUAAUG
Get precursor sequence
Structure
        10           20        30        40        50         
CUGACCUCGCGGUCUCU--  -| G    UG AG        U  U        UGUGAGC 
                   UC CU UCAC  C  ACAGUCAG AG UGGUCUGG       \
                   AG GA GGUG  G  UGUCGGUU UC ACUAGACU       A
GUAAUAUGGUCCCGUCACG  A^ -    GU AG        C  C        CUUAAGG 
       110       100         90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and -1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-2970_5p

mirBase accessionMIMAT0028670
Sequence
0- GACAGUCAGUAGUUGGUCUGGU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-2970-5p
Star sequence

Mdo-Mir-2970_3p*

mirBase accessionMIMAT0028671
Sequence
37- CAGAUCACCUCUUGGCUGUGAG -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-2970-3p