MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-2970

Family name MIR-2970 (all species)
Seed ACAGUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2970  Ami-Mir-2970  Cli-Mir-2970  Cpi-Mir-2970  Gga-Mir-2970  Gja-Mir-2970  Lch-Mir-2970  Mdo-Mir-2970  Mun-Mir-2970  Neu-Mir-2970  Oan-Mir-2970  Pbv-Mir-2970  Sha-Mir-2970  Spt-Mir-2970  Tgu-Mir-2970  Xla-Mir-2970-P1  Xla-Mir-2970-P2 
Node of Origin (locus) Sarcopterygii
Node of Origin (family) Sarcopterygii
Genome context
(xenTro9_add)
chr4: 126187377-126187435 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2970)
Mir-425 chr4: 126189462-126189524 [-] UCSC Ensembl
Mir-191 chr4: 126192673-126192732 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUGCAGGAUUCGCUCUCCUGUUGCUGCAGACAGUCAGAAGUUGGUCUGGCGUGAGAAUAGAUUCUCAGAUCAUCUCUUGGCUGAUGCCAGCUACCAGGGAAAAGCUGAGAAGCUGAU
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Structure
        10         20          30        40        50         
GGUUGCAGGAUUCGCUC-     UU-   -|  GA      GA  U        CGUGAGA 
                  UCCUG   GCU GCA  CAGUCA  AG UGGUCUGG       \
                  GGGAC   CGA CGU  GUCGGU  UC ACUAGACU       A
UAGUCGAAGAGUCGAAAA     CAU   C^  A-      UC  U        CUUAGAU 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-2970_5p

mirBase accessionNone
Sequence
0- GACAGUCAGAAGUUGGUCUGGC -22
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Star sequence

Xtr-Mir-2970_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGAUCAUCUCUUGGCUGAUGC -59
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