| MirGeneDB ID | Spt-Mir-146-P2 |
|---|---|
| Family name | MIR-146 (all species) |
| Seed | GAGAACU |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-146-P1 Spt-Mir-146-P4 |
| Orthologues | Aca-Mir-146-P2 Ami-Mir-146-P2 Cli-Mir-146-P2 Cmi-Mir-146-P2 Cpi-Mir-146-P2 Ebu-Mir-146 Gga-Mir-146-P2 Gja-Mir-146-P2 Lch-Mir-146-P2 Mun-Mir-146-P2-v1 Mun-Mir-146-P2-v2 Pbv-Mir-146-P2 Pma-Mir-146 Sto-Mir-146-P2 Tgu-Mir-146-P2 Xla-Mir-146-P2a Xla-Mir-146-P2b Xtr-Mir-146-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005545.1: 387339-387403 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAAGUGCUGAGCCCUAGCAGUUCCAAGCUCUGAGAACUGAAUUUCAUGGACUGGUUGUAAUUCAUUGUCUUCAGUCCAUAGUACUCAGUUCUCUAGCUUGGCUGUAUCUGACUUCACAGCUAAUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAAGUGCUGAGCCCUAG----| UU CU AUUUC GUUGUAAU CAG CCAAGCU GAGAACUGA AUGGACUG U GUC GGUUCGA CUCUUGACU UACCUGAC C CUAAUCGACACUUCAGUCUAU^ -- U- CAUGA UUCUGUUA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-146-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGAACUGAAUUUCAUGGACUG -23
Get sequence
|
| Star sequence | Spt-Mir-146-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- GUCCAUAGUACUCAGUUCUCUA -65
Get sequence
|
