MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-146-P2a

Family name MIR-146 (all species)
Seed GAGAACU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-146-P2b  Xla-Mir-146-P4 
Orthologues Aca-Mir-146-P2  Ami-Mir-146-P2  Cli-Mir-146-P2  Cmi-Mir-146-P2  Cpi-Mir-146-P2  Ebu-Mir-146  Gga-Mir-146-P2  Gja-Mir-146-P2  Lch-Mir-146-P2  Mun-Mir-146-P2-v1  Mun-Mir-146-P2-v2  Pbv-Mir-146-P2  Pma-Mir-146  Spt-Mir-146-P2  Sto-Mir-146-P2  Tgu-Mir-146-P2  Xtr-Mir-146-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 5138124-5138188 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAGAGAACCAAUGGCAGGGCCCGGCUCUGAGAACUGAAUUCCAUGGACUGUUCCACUGGCAGAUUCCUCAGUCCACAGGGUUCAGUGCUCCAGUCUGGCUGCCGCUAACAUCGUGACUAAUA
Get precursor sequence
Structure
        10        20          30        40        50        60  
ACUGAGAGAACCAAUGGCAG--|   C    CU   A         CA       UUCCACUG 
                      GGCC GGCU  GAG ACUGAAUUC  UGGACUG        G
                      UCGG CUGA  CUC UGACUUGGG  ACCUGAC        C
AUAAUCAGUGCUACAAUCGCCG^   U    C-   G         AC       UCCUUAGA 
   120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-146-P2a_5p
mirBase accessionNone
Sequence 
0- UGAGAACUGAAUUCCAUGGACUG -23
Get sequence
Star sequence

Xla-Mir-146-P2a_3p*
mirBase accessionNone
Sequence 
43- GUCCACAGGGUUCAGUGCUCCA -65
Get sequence