MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-146

Family name MIR-146 (all species)
Seed GAGAACU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-146
Paralogues
Orthologues Aca-Mir-146-P1  Aca-Mir-146-P2  Ami-Mir-146-P1  Ami-Mir-146-P2  Ami-Mir-146-P4  Bta-Mir-146-P1  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P1  Cfa-Mir-146-P4  Cja-Mir-146-P1  Cja-Mir-146-P4  Cli-Mir-146-P1  Cli-Mir-146-P2  Cli-Mir-146-P4  Cmi-Mir-146-P1  Cmi-Mir-146-P2  Cmi-Mir-146-P4  Cpi-Mir-146-P1  Cpi-Mir-146-P2  Cpi-Mir-146-P4  Cpo-Mir-146-P1  Cpo-Mir-146-P4  Dno-Mir-146-P1  Dno-Mir-146-P4  Dre-Mir-146-P1  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Eca-Mir-146-P1  Eca-Mir-146-P4-v1  Eca-Mir-146-P4-v2  Ete-Mir-146-P1  Gga-Mir-146-P1  Gga-Mir-146-P2  Gga-Mir-146-P4  Gja-Mir-146-P1  Gja-Mir-146-P2  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Hsa-Mir-146-P4  Laf-Mir-146-P1  Laf-Mir-146-P4  Lch-Mir-146-P1  Lch-Mir-146-P2  Lch-Mir-146-P4  Loc-Mir-146-P1  Loc-Mir-146-P4  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mdo-Mir-146-P4  Mml-Mir-146-P1  Mml-Mir-146-P4  Mmr-Mir-146-P1  Mmr-Mir-146-P4  Mmu-Mir-146-P1  Mmu-Mir-146-P4  Mun-Mir-146-P1  Mun-Mir-146-P2-v1  Mun-Mir-146-P2-v2  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P1  Oan-Mir-146-P4  Ocu-Mir-146-P1  Ocu-Mir-146-P4  Pab-Mir-146-P1  Pab-Mir-146-P4  Pbv-Mir-146-P1  Pbv-Mir-146-P2  Rno-Mir-146-P1  Rno-Mir-146-P4  Sha-Mir-146-P1  Sha-Mir-146-P4  Spt-Mir-146-P1  Spt-Mir-146-P2  Spt-Mir-146-P4  Sto-Mir-146-P2  Sto-Mir-146-P4  Tgu-Mir-146-P1  Tgu-Mir-146-P2  Tgu-Mir-146-P4  Tni-Mir-146-P1  Xla-Mir-146-P2a  Xla-Mir-146-P2b  Xla-Mir-146-P4  Xtr-Mir-146-P2  Xtr-Mir-146-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046079.1: 15291613-15291673 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACGUACGCGUGGAGAGGGUGCCGGGCGGUGAGAACUGAAUUCCAUAGGCUGUGACGACACUGCAGCAGCCUGGGUCUUCAGUUUUCUCCGUCAGGCACUCGGUGACAUCCCGUCGGCGU
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Structure
        10          20        30        40        50        60
AUACGUACGCGUGGAGA--|      G     U          UU  A        GACGA 
                   GGGUGCC GGCGG GAGAACUGAA  CC UAGGCUGU     C
                   CUCACGG CUGCC CUUUUGACUU  GG GUCCGACG     A
UGCGGCUGCCCUACAGUGG^      A     U          CU  -        ACGUC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-146_5p
mirBase accessionMIMAT0019478
Sequence 
0- UGAGAACUGAAUUCCAUAGGCUGU -24
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Star sequence

Pma-Mir-146_3p*
mirBase accessionMIMAT0019479
Sequence 
38- AGCCUGGGUCUUCAGUUUUCUCC -61
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