Mir-146-P1

MirGeneDB ID

Ami-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-146b

Paralogues

Ami-Mir-146-P2 Ami-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017709336.1: 14431087-14431146 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GCAGCAGUCUCGUACCUCGCUCCUUGGCUUUGAGAACUGAAUUCCAUAGGCUUUAAAAGACAAAAAAAGCCCUAUGGAUUCAGUUCUGUAGCUGGGCGGCAAAUAAACACCCAACUUCCC

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Structure

        10          20        30        40        50           
GCAGCAGUCUCGUACCUC--|  C  UG   UUG          U       -    AAAAG 
                    GCU CU  GCU   AGAACUGAAU CCAUAGG CUUU     \
                    CGG GG  CGA   UCUUGACUUA GGUAUCC GAAA     A
CCCUUCAACCCACAAAUAAA^  C  GU   UG-          -       C    AAAAC 
.       110       100        90         80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-146-P1_5p

mirBase accession

MIMAT0038172

Sequence

0- UGAGAACUGAAUUCCAUAGGCUUU -24

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Star sequence

Ami-Mir-146-P1_3p*

mirBase accession

MIMAT0038173

Sequence

37- AGCCCUAUGGAUUCAGUUCUGUA -60

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