| MirGeneDB ID | Pab-Mir-146-P1 |
|---|---|
| Family name | MIR-146 (all species) |
| Seed | GAGAACU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-146-P4 |
| Orthologues | Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054687.2: 109407192-109407251 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGGCUGAAAGAACUUUGGCCACCUGGCACUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGCAAAUGCCCUGUGGACUCAGUUCUGGUGCCCGGCAGUGCUACAACAUCAAUGCCAAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGGCUGAAAGAACUUUG-----| ACCU G AU CU GAGCU GCC GGCACU AGAACUGA UCCAUAGG GU C CGG CCGUGG UCUUGACU AGGUGUCC UA U GAACCGUAACUACAACAUCGUGA^ C--- - C- CG AACGA . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on the 3p arm. |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-146-P1_5p |
| mirBase accession | None |
| Sequence |
0- UGAGAACUGAAUUCCAUAGGCUGU -24
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|
| Star sequence | Pab-Mir-146-P1_3p* |
| mirBase accession | None |
| Sequence |
38- GCCCUGUGGACUCAGUUCUGGU -60
Get sequence
|
