MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-146-P4 
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cja-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Eca-Mir-146-P1  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Laf-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmr-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054687.2: 109407192-109407251 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCUGAAAGAACUUUGGCCACCUGGCACUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGCAAAUGCCCUGUGGACUCAGUUCUGGUGCCCGGCAGUGCUACAACAUCAAUGCCAAG
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Structure
        10             20        30        40        50        60
CAGGCUGAAAGAACUUUG-----|  ACCU      G        AU        CU  GAGCU 
                       GCC    GGCACU AGAACUGA  UCCAUAGG  GU     C
                       CGG    CCGUGG UCUUGACU  AGGUGUCC  UA     U
GAACCGUAACUACAACAUCGUGA^  C---      -        C-        CG  AACGA 
.       110       100           90         80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-146-P1_5p
mirBase accessionNone
Sequence 
0- UGAGAACUGAAUUCCAUAGGCUGU -24
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Star sequence

Pab-Mir-146-P1_3p*
mirBase accessionNone
Sequence 
38- GCCCUGUGGACUCAGUUCUGGU -60
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