MirGeneDB ID | Aca-Mir-146-P1 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-146a
|
Paralogues |
Aca-Mir-146-P2
|
Orthologues |
Ami-Mir-146-P1
Bta-Mir-146-P1
Cfa-Mir-146-P1
Cja-Mir-146-P1
Cli-Mir-146-P1
Cmi-Mir-146-P1
Cpi-Mir-146-P1
Cpo-Mir-146-P1
Dno-Mir-146-P1
Dre-Mir-146-P1
Ebu-Mir-146
Eca-Mir-146-P1
Ete-Mir-146-P1
Gga-Mir-146-P1
Gja-Mir-146-P1
Gmo-Mir-146-P1
Hsa-Mir-146-P1
Laf-Mir-146-P1
Lch-Mir-146-P1
Loc-Mir-146-P1
Mal-Mir-146-P1
Mdo-Mir-146-P1
Mml-Mir-146-P1
Mmr-Mir-146-P1
Mmu-Mir-146-P1
Mun-Mir-146-P1
Oan-Mir-146-P1
Ocu-Mir-146-P1
Pab-Mir-146-P1
Pbv-Mir-146-P1
Pma-Mir-146
Rno-Mir-146-P1
Sha-Mir-146-P1
Spt-Mir-146-P1
Tgu-Mir-146-P1
Tni-Mir-146-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (anoCar2) |
3: 39596510-39596569 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGGAGGAGACCUACAUGGUUGCCUAGCUCUGAGAACUGAAUUCCAUAGGCUUUAGAAUAAUUGAAACGCCCCGUGGAUUCAGUUCUACAGCUAGGCAGCAACUAAACUCCAGAAUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGGAGGAGACCUACAUG--| CUG U A- UUUAGAAU
GUUGCCUAGCU AGAACUGAAU CCAU GGC \
CGACGGAUCGA UCUUGACUUA GGUG CCG A
GUCGUAAGACCUCAAAUCAA^ CA- - CC CAAAGUUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-146-P1_5p |
mirBase accession | MIMAT0021775 |
Sequence |
0- UGAGAACUGAAUUCCAUAGGCUUU -24
Get sequence
|
Star sequence |
Aca-Mir-146-P1_3p* |
mirBase accession | MIMAT0021776 |
Sequence |
38- GCCCCGUGGAUUCAGUUCUACA -60
Get sequence
|