MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-146
Paralogues
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Hsa-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_4588: 449897-449955 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGACCAUAGUUCAACUGGUGCUCUACUAUGAGAACUGAAUUCCAUAGAUGGCUCGCUCAGGUAUCGUCUAUGGGCUCAGUUCUUUUGGCAUGGUACUCAUUUUCCAAACAUAUUAAC
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Structure
        10          20        30        40        50         
ACAGACCAUAGUUCAACU--|     CUA   U         AU           CUCGC 
                    GGUGCU   CUA GAGAACUGA  UCCAUAGAUGG     U
                    UCAUGG   GGU UUCUUGACU  GGGUAUCUGCU     C
CAAUUAUACAAACCUUUUAC^     UAC   U         C-           AUGGA 
       110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-146-P1_5p
mirBase accessionMIMAT0044297
Sequence 
0- UGAGAACUGAAUUCCAUAGAUGG -23
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Star sequence

Gmo-Mir-146-P1_3p*
mirBase accessionMIMAT0044298
Sequence 
37- GUCUAUGGGCUCAGUUCUUUUG -59
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