MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID mmr-mir-146b
Paralogues Mmr-Mir-146-P4 
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cja-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Eca-Mir-146-P1  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Laf-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pab-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007675.1: 52000414-52000473 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCUGAGAAGACUUUGGCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUGUGAGCUCUAGUGAAUGCCCUAGGGACUCAGUUCUGGUGCCUGGCUGUGCCACGCUGUCAACGCCGCC
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Structure
        10             20        30        40        50        60
CAGGCUGAGAAGACUUU-----|    CCU   U  G        A    A    CU  GAGCU 
                      GGCCA   GGC CU AGAACUGA UUCC UAGG  GU     C
                      UCGGU   CCG GG UCUUGACU AGGG AUCC  UA     U
CCGCCGCAACUGUCGCACCGUG^    ---   U  -        C    -    CG  AGUGA 
.       110       100           90         80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Mu Mu Mu Mu Mu Mu Mu Mu
Mature sequence

Mmr-Mir-146-P1_5p

mirBase accessionMIMAT0049200
Sequence
0- UGAGAACUGAAUUCCAUAGGCUGU -24
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Star sequence

Mmr-Mir-146-P1_3p*

mirBase accessionNone
Sequence
38- GCCCUAGGGACUCAGUUCUGGU -60
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