| MirGeneDB ID | Lch-Mir-146-P1 |
|---|---|
| Family name | MIR-146 (all species) |
| Seed | GAGAACU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-146-P2 Lch-Mir-146-P4 |
| Orthologues | Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cja-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Eca-Mir-146-P1 Ete-Mir-146-P1 Gga-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Laf-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmr-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pab-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
BAHO01372914.1: 4531-4595 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGCUGCAGGGGUCGCUGGGUGCUUGGCUGUGAGAACUGAAUUCCAUAGAUGGUUGGAGUAGAAUGGAAAACGGUCUGUGGAUUCAGUUCUUUCAGUCUGGUGACCCCCCAGGCCGCCAAGUCCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGCUGCAGGGGUCGCU- -| U U U G UUGGAGUA GGGU GCU GGCUG GAGAACUGAAU CCAUAGAU G G CCCA UGG CUGAC UUCUUGACUUA GGUGUCUG C A UCCUGAACCGCCGGACCC G^ U U - G AAAAGGUA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Not in assembly but in trace archive. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Lch-Mir-146-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGAACUGAAUUCCAUAGAUGG -23
Get sequence
|
| Star sequence | Lch-Mir-146-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- GUCUGUGGAUUCAGUUCUUUCA -65
Get sequence
|
