MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-146-P2 
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cja-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Eca-Mir-146-P1  Ete-Mir-146-P1  Gga-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Laf-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmr-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pab-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172003.1: 221257-221316 [+]
Precursor
(pre-Mir +30nt flank)
UACUAGAAGCCCUGAAUGGCUGUUUGGCUCUGAGAACUGAAUUCCAUAGGCUUUGUGAUAACAGAAACGCCCCAUGGAUUCAGUUCUACAGCUUGACAGCAGCUGAACACCAAGAAGCUG
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Structure
        10          20        30        40         50          
UACUAGAAGCCCUGAAUG--|     U    CUG          U    A-   U  GUGAU 
                    GCUGUU GGCU   AGAACUGAAU CCAU  GGC UU     \
                    CGACAG UCGA   UCUUGACUUA GGUA  CCG AA     A
GUCGAAGAACCACAAGUCGA^     U    CA-          -    CC   C  AGACA 
.       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-146-P1_5p
mirBase accessionNone
Sequence 
0- UGAGAACUGAAUUCCAUAGGCUUU -24
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Star sequence

Gja-Mir-146-P1_3p*
mirBase accessionNone
Sequence 
37- CGCCCCAUGGAUUCAGUUCUACA -60
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