MirGeneDB ID | Dre-Mir-146-P1 |
Family name |
MIR-146 (all species) |
Seed |
GAGAACU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-146a
|
Paralogues |
Dre-Mir-146-P4-v1
Dre-Mir-146-P4-v2
|
Orthologues |
Aca-Mir-146-P1
Ami-Mir-146-P1
Bta-Mir-146-P1
Cfa-Mir-146-P1
Cja-Mir-146-P1
Cli-Mir-146-P1
Cmi-Mir-146-P1
Cpi-Mir-146-P1
Cpo-Mir-146-P1
Dno-Mir-146-P1
Ebu-Mir-146
Eca-Mir-146-P1
Ete-Mir-146-P1
Gga-Mir-146-P1
Gja-Mir-146-P1
Gmo-Mir-146-P1
Hsa-Mir-146-P1
Laf-Mir-146-P1
Lch-Mir-146-P1
Loc-Mir-146-P1
Mal-Mir-146-P1
Mdo-Mir-146-P1
Mml-Mir-146-P1
Mmr-Mir-146-P1
Mmu-Mir-146-P1
Mun-Mir-146-P1
Oan-Mir-146-P1
Ocu-Mir-146-P1
Pab-Mir-146-P1
Pbv-Mir-146-P1
Pma-Mir-146
Rno-Mir-146-P1
Sha-Mir-146-P1
Spt-Mir-146-P1
Tgu-Mir-146-P1
Tni-Mir-146-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
chr13: 11822194-11822254 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGGCUGAGUUUGUUUUGAGCACUUUUCCCUGAGAACUGAAUUCCAUAGAUGGUGUUCAUGAAAAGUUCAUCUAUGGGCUCAGUUCUUCUGGCAAUCUGUUUAAUGUCUGCUACAAAUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGGCUGAGUUUGUUUU--| CU U CU AU UGUUCA
GAGCA UU CC GAGAACUGA UCCAUAGAUGG U
UUUGU AA GG UUCUUGACU GGGUAUCUACU G
UCUUAAACAUCGUCUGUAA^ CU C UC C- UGAAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dre-Mir-146-P1_5p |
mirBase accession | MIMAT0001843 |
Sequence |
0- UGAGAACUGAAUUCCAUAGAUGG -23
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-146a
|
Star sequence |
Dre-Mir-146-P1_3p* |
mirBase accession | None |
Sequence |
39- AUCUAUGGGCUCAGUUCUUCUG -61
Get sequence
|