MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-146-P1

Family name MIR-146 (all species)
Seed GAGAACU
Species Horse (Equus caballus)
MiRBase ID eca-mir-146b
Paralogues Eca-Mir-146-P4-v1  Eca-Mir-146-P4-v2 
Orthologues Aca-Mir-146-P1  Ami-Mir-146-P1  Bta-Mir-146-P1  Cfa-Mir-146-P1  Cja-Mir-146-P1  Cli-Mir-146-P1  Cmi-Mir-146-P1  Cpi-Mir-146-P1  Cpo-Mir-146-P1  Dno-Mir-146-P1  Dre-Mir-146-P1  Ebu-Mir-146  Ete-Mir-146-P1  Gga-Mir-146-P1  Gja-Mir-146-P1  Gmo-Mir-146-P1  Hsa-Mir-146-P1  Laf-Mir-146-P1  Lch-Mir-146-P1  Loc-Mir-146-P1  Mal-Mir-146-P1  Mdo-Mir-146-P1  Mml-Mir-146-P1  Mmr-Mir-146-P1  Mmu-Mir-146-P1  Mun-Mir-146-P1  Oan-Mir-146-P1  Ocu-Mir-146-P1  Pab-Mir-146-P1  Pbv-Mir-146-P1  Pma-Mir-146  Rno-Mir-146-P1  Sha-Mir-146-P1  Spt-Mir-146-P1  Tgu-Mir-146-P1  Tni-Mir-146-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009148.1: 27882551-27882610 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGACUGAGAGAACUUUGGCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUGUGAGCUCCAGCAAAUGCCCUAGGGACUCAGUUCUGGUGCCCGGCUGUGCUACACCAUCAAUACUGAG
Get precursor sequence
Structure
        10        20          30        40        50        60
AAGACUGAGAGAACUUUG  -  -| U   U  G        A    A    CU  GAGCU 
                  GC CA CC GGC CU AGAACUGA UUCC UAGG  GU     C
                  CG GU GG CCG GG UCUUGACU AGGG AUCC  UA     C
GAGUCAUAACUACCACAU  U  C^ C   U  -        C    -    CG  AACGA 
.       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-146-P1_5p
mirBase accessionMIMAT0012891
Sequence 
0- UGAGAACUGAAUUCCAUAGGCUGU -24
Get sequence
Star sequence

Eca-Mir-146-P1_3p*
mirBase accessionMIMAT0012892
Sequence 
37- UGCCCUAGGGACUCAGUUCUGGU -60
Get sequence