Mir-146-P4-v1

MirGeneDB ID

Eca-Mir-146-P4-v1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-146a

Paralogues

Eca-Mir-146-P1 Eca-Mir-146-P4-v2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009161.1: 18375050-18375107 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-146-P4-v1)

Mir-146-P4-v1 CM009161.1: 18375050-18375107 [-] UCSC Ensembl
Mir-146-P4-v2 CM009161.1: 18375050-18375108 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCUGGAAAGCCUGUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAGUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGACUCAGG

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Structure

        10            20        30        40        50        
CGCUGGAAAGCCUGUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     UAUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     G
GGACUCAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
      110       100         90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-146-P4-v1_5p

mirBase accession

MIMAT0013065

Sequence

0- UGAGAACUGAAUUCCAUGGGUU -22

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Star sequence

Eca-Mir-146-P4-v1_3p* (predicted)

mirBase accession

None

Sequence

36- CCUGUGAAGUUCAGUUCUUCAG -58

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