Mir-146-P4-v1

MirGeneDB ID

Eca-Mir-146-P4-v1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-146a

Paralogues

Eca-Mir-146-P1 Eca-Mir-146-P4-v2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009161.1: 18375050-18375107 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-146-P4-v1)

Mir-146-P4-v1 CM009161.1: 18375050-18375107 [-] UCSC Ensembl
Mir-146-P4-v2 CM009161.1: 18375050-18375108 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCUGGAAAGCCUGUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAGUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGACUCAGG

Get precursor sequence

Structure

        10            20        30        40        50        
CGCUGGAAAGCCUGUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     UAUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     G
GGACUCAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
      110       100         90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-146-P4-v1_5p

mirBase accession

MIMAT0013065

Sequence

0- UGAGAACUGAAUUCCAUGGGUU -22

Get sequence

Star sequence

Eca-Mir-146-P4-v1_3p* (predicted)

mirBase accession

None

Sequence

36- CCUGUGAAGUUCAGUUCUUCAG -58

Get sequence