Mir-146-P4

MirGeneDB ID

Mun-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-146-P1 Mun-Mir-146-P2-v1 Mun-Mir-146-P2-v2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cja-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

146-P3_LR594639.1:142550636-142550774: 39-101 [-]

Precursor
(pre-Mir +30nt flank)

CUACUCGUGAAGCUCAUGAGGUCCAAGCUUUGAGAACUGAAUUUCAUUGGUUGUAAAUGAAUCUUUGCUAGACCCGUGGAACUCAGUUCUGUAGCUUGGAUAUCACAGCUUCAGAUACAGAGG

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Structure

        10          20        30        40        50        60 
CUACUCGUGAAGCUCAU--| G         UUG        A      U    GUAAAUGA 
                   GA GUCCAAGCU   AGAACUGA UUUCAU GGUU        A
                   CU UAGGUUCGA   UCUUGACU AAGGUG CCAG        U
GGAGACAUAGACUUCGACA^ A         UG-        C      C    AUCGUUUC 
 120       110       100         90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-146-P4_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUUCAUUGGUUG -23

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Star sequence

Mun-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

41- ACCCGUGGAACUCAGUUCUGUA -63

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