| MirGeneDB ID | Cja-Mir-146-P4 |
|---|---|
| Family name | MIR-146 (all species) |
| Seed | GAGAACU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-146-P1 |
| Orthologues | Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 21401477-21401533 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUCUGGAAAGCCUAUGCGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGUGUCAGACCUGUGAAAUUCAGUUCUUCAGCUGGGAUAUCUCUGUCCCCGUGGGCUUGAGet precursor sequence |
| Structure | 10 20 30 40 50 CUCUGGAAAGCCUAUGC---| U UU C GUGUC GUAUCC CAGCU GAGAACUGAAUU CAUGGGUU A UAUAGG GUCGA UUCUUGACUUAA GUGUCCAG G AGUUCGGGUGCCCCUGUCUC^ - C- A ACUGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-146-P4_5p |
| mirBase accession | None |
| Sequence |
0- UGAGAACUGAAUUCCAUGGGUU -22
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|
| Star sequence | Cja-Mir-146-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CCUGUGAAAUUCAGUUCUUCA -57
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|
