Mir-146-P4

MirGeneDB ID

Cja-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-146-P1

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Eca-Mir-146-P4-v1 Eca-Mir-146-P4-v2 Gga-Mir-146-P4 Hsa-Mir-146-P4 Laf-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmr-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Neu-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pab-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021916.1: 21401477-21401533 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUGGAAAGCCUAUGCGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGUGUCAGACCUGUGAAAUUCAGUUCUUCAGCUGGGAUAUCUCUGUCCCCGUGGGCUUGA

Get precursor sequence

Structure

        10           20        30        40        50        
CUCUGGAAAGCCUAUGC---|     U     UU            C        GUGUC 
                    GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                    UAUAGG GUCGA  UUCUUGACUUAA GUGUCCAG     G
AGUUCGGGUGCCCCUGUCUC^     -     C-            A        ACUGU 
     110       100         90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Cja-Mir-146-P4_5p

mirBase accession

None

Sequence

0- UGAGAACUGAAUUCCAUGGGUU -22

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Star sequence

Cja-Mir-146-P4_3p* (predicted)

mirBase accession

None

Sequence

36- CCUGUGAAAUUCAGUUCUUCA -57

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