MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-146c
Paralogues Tgu-Mir-146-P1  Tgu-Mir-146-P2 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Eca-Mir-146-P4-v1  Eca-Mir-146-P4-v2  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 13: 2361944-2362007 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAAAAUGAAUGUCAUUUAUUCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUCUGCUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUUUCUGUCUUCACAUACACAG
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Structure
        10        20          30        40        50        60  
CUGAAAAUGAAUGUCAUUUAU--|  C    UU         A           GUAAUUGAA 
                       UCU AGCU  GAGAACUGA UUCCAUGGGUU         \
                       AGG UCGA  UUCUUGACU GGGGUACCCAG         U
GACACAUACACUUCUGUCUUUAU^  U    C-         C           ACUGUCGUC 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-146-P4_5p
mirBase accessionMIMAT0014609
Sequence 
0- UGAGAACUGAAUUCCAUGGGUUG -23
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Star sequence

Tgu-Mir-146-P4_3p*
mirBase accessionNone
Sequence 
42- ACCCAUGGGGCUCAGUUCUUCA -64
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