Mir-146-P4

MirGeneDB ID

Tgu-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-146c

Paralogues

Tgu-Mir-146-P1 Tgu-Mir-146-P2

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Cpo-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

13: 2361944-2362007 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGAAAAUGAAUGUCAUUUAUUCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUCUGCUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUUUCUGUCUUCACAUACACAG

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Structure

        10        20          30        40        50        60  
CUGAAAAUGAAUGUCAUUUAU--|  C    UU         A           GUAAUUGAA 
                       UCU AGCU  GAGAACUGA UUCCAUGGGUU         \
                       AGG UCGA  UUCUUGACU GGGGUACCCAG         U
GACACAUACACUUCUGUCUUUAU^  U    C-         C           ACUGUCGUC 
  120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-146-P4_5p

mirBase accession

MIMAT0014609

Sequence

0- UGAGAACUGAAUUCCAUGGGUUG -23

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Star sequence

Tgu-Mir-146-P4_3p*

mirBase accession

None

Sequence

42- ACCCAUGGGGCUCAGUUCUUCA -64

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